- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.1480:Adenosylhomocysteinase-like
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1a7a | [A4] | [A4] | [A4] | 2.8 | ADC:(1___sq___R,2___sq___S)-9-(2-HYDROXY-3___sq___-KETO-CYCLOPENTEN-1-YL)ADENINE MSE:SELENOMETHIONINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
1b3r | [A4] | [A4] | [A4] | 2.8 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
1d4f | [A4] | [A4] | [A4] | 2.8 | ADN:ADENOSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
1k0u | [A4] | [A4] | [A4] | 3 | DEA:D-ERITADENINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
1ky4 | [A4] | [A4] | [A4] | 2.8 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
1ky5 | [A4] | [A4] | [A4] | 2.8 | ADY:3___sq___-OXO-ADENOSINE NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | |||
1li4 | [A4] | [A4] | [A4] | 2.01 | IPA:ISOPROPYL ALCOHOL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE NOC:3-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-CYCLOPENTANE-1,2-DIOL | |||
1v8b | [A4] | [A4] | [A4] | 2.4 | ADN:ADENOSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
1xwf | [A4] | [A4] | [A4] | 2.8 | ADN:ADENOSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2h5l | [A4] | [A4] | [A4] | 2.8 | 3DD:(2R,3R)-4-(4-AMINO-1H-IMIDAZO[4,5-C]PYRIDIN-1-YL)-2,3-DIHYDROXYBUTANOIC ACID NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2ziz | [A4] | [A4] | [A4] | 2.2 | AD3:3-DEAZA-ADENOSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2zj0 | [A4] | [A4] | [A4] | 2.42 | 2FA:2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
2zj1 | [A4] | [A4] | [A4] | 2.01 | ARJ:(2S,3R,5R)-3-(6-AMINO-9H-PURIN-9-YL)-2-HYDROXY-5-(HYDROXYMETHYL)CYCLOPENTANONE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3ce6 | [A4] | [A4] | [A4] | 1.6 | ADN:ADENOSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3d64 | [A4] | [A4] | [A4] | 2.3 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3dhy | [A4] | [A4] | [A4] | 2 | 3DH:5___sq___-S-ETHYL-5___sq___-THIOADENOSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3g1u | [A4] | [A4] | [A4] | 2.2 | ADN:ADENOSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3glq | [A4] | [A4] | [A4] | 2.3 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE RAB:2-(6-AMINO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL | |||
3gvp | [A4] | [A4] | [A4] | 2.25 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3h9u | [A8] | [A8] | [A8] | 1.9 | ADN:ADENOSINE GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PG4:TETRAETHYLENE GLYCOL | |||
3mtg | [A4] | [A4] | [A4] | 2.64 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3n58 | [A4] | [A4] | [A4] | 2.39 | ADN:ADENOSINE K:POTASSIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3nj4 | [A4] | [A4] | [A4] | 2.5 | AFX:(4S,5S)-4-(6-AMINO-9H-PURIN-9-YL)-3-FLUORO-5-HYDROXY-2-(HYDROXYMETHYL)CYCLOPENT-2-EN-1-ONE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
3ond | [A4] | [A4] | [A4] | 1.17 | ADN:ADENOSINE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
3one | [A4] | [A4] | [A4] | 1.35 | ADE:ADENINE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
3onf | [A4] | [A4] | [A4] | 2 | 3AD:3___sq___-DEOXYADENOSINE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
3x2e | [A4] | [A4] | [A4] | 2.85 | NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | |||
3x2f | [A4] | [A4] | [A4] | 2.04 | NA:SODIUM ION NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE NO3:NITRATE ION | |||
4lvc | [A4] | [A4] | [A4] | 1.74 | ACT:ACETATE ION ADN:ADENOSINE GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE NH4:AMMONIUM ION | |||
4pfj | [A4] | [A4] | [A4] | 2.3 | ADN:ADENOSINE ALY:N(6)-ACETYLLYSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
4pgf | [A4] | [A4] | [A4] | 2.59 | ADN:ADENOSINE ALY:N(6)-ACETYLLYSINE NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
4yvf | [A4] | [A4] | [A4] | 2.7 | NAI:1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE XFA:2-{[5-CHLORO-2-(4-CHLOROPHENOXY)PHENYL](2-{[2-(METHYLAMINO)ETHYL]AMINO}-2-OXOETHYL)AMINO}-N-(1,3-DIHYDRO-2H-ISOINDOL-2-YL)-N-METHYLACETAMIDE | |||
5axa | [A4] | [A4] | [A4] | 1.55 | ADN:ADENOSINE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
5axb | [A4] | [A4] | [A4] | 1.65 | NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE NRN:(1S,2R,3S,4R)-4-(6-AMINOPURIN-9-YL)CYCLOPENTANE-1,2,3-TRIOL | |||
5axc | [A4] | [A4] | [A4] | 1.55 | ARJ:(2S,3R,5R)-3-(6-AMINO-9H-PURIN-9-YL)-2-HYDROXY-5-(HYDROXYMETHYL)CYCLOPENTANONE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
5axd | [A4] | [A4] | [A4] | 1.6 | NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE RBV:1-(BETA-D-RIBOFURANOSYL)-1H-1,2,4-TRIAZOLE-3-CARBOXAMIDE | |||
5hm8 | [A4] | [A4] | [A4] | 2.85 | ADN:ADENOSINE CL:CHLORIDE ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE SO4:SULFATE ION | |||
5jpi | [A4] | [A4] | [A4] | 2.15 | CL:CHLORIDE ION DEA:D-ERITADENINE EDO:1,2-ETHANEDIOL GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PEG:DI(HYDROXYETHYL)ETHER PO4:PHOSPHATE ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
5jxw | [A4] | [A4] | [A4] | 2.25 | 6OS:NEPLANOCIN-A GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE P6G:HEXAETHYLENE GLYCOL TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
5m5k | [A4] | [A4] | [A4] | 1.84 | 3AD:3___sq___-DEOXYADENOSINE ACT:ACETATE ION ADN:ADENOSINE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PEG:DI(HYDROXYETHYL)ETHER PGE:TRIETHYLENE GLYCOL | |||
5m65 | [A2] | [A2] | [A2] | 1.95 | ADE:ADENINE BR:BROMIDE ION EDO:1,2-ETHANEDIOL NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE | |||
5m66 | [A4] | [A4] | [A4] | 1.95 | ADN:ADENOSINE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PEG:DI(HYDROXYETHYL)ETHER | |||
5m67 | [A4] | [A4] | [A4] | 1.54 | 3D1:(2R,3S,5R)-5-(6-AMINO-9H-PURIN-9-YL)-TETRAHYDRO-2-(HYDROXYMETHYL)FURAN-3-OL ACT:ACETATE ION ADE:ADENINE NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PEG:DI(HYDROXYETHYL)ETHER | |||
5t8k | [A3B] | [A3B] | [A4] | 1.95 | ADE:ADENINE CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE GOL:GLYCEROL NA:SODIUM ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE P6G:HEXAETHYLENE GLYCOL PEG:DI(HYDROXYETHYL)ETHER PGE:TRIETHYLENE GLYCOL TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
5tj9 | [A4] | [A4] | [A4] | 2.6 | 7CY:(1R,2S,3R,5R)-3-(6-AMINO-9H-PURIN-9-YL)-5-(HYDROXYMETHYL)CYCLOPENTANE-1,2-DIOL GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE P6G:HEXAETHYLENE GLYCOL PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION | |||
5tls | [A4] | [A4] | [A4] | 2.4 | CL:CHLORIDE ION GOL:GLYCEROL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PO4:PHOSPHATE ION ZD2:(2S)-4-(6-AMINO-9H-PURIN-9-YL)-2-HYDROXYBUTANOIC ACID | |||
5utu | [A4] | [A4] | [A4] | 2.65 | ADN:ADENOSINE CL:CHLORIDE ION NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL P6G:HEXAETHYLENE GLYCOL PEG:DI(HYDROXYETHYL)ETHER SAH:S-ADENOSYL-L-HOMOCYSTEINE SO4:SULFATE ION | |||
5v96 | [A] | [A] | [A] | 2 | ADN:ADENOSINE EDO:1,2-ETHANEDIOL NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE PO4:PHOSPHATE ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA